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Well, it depends on how bad the leak is. If the leak is bad enough and you're running the system with low refrigerant, you can cause issues with the compressor or other components such as the accumulator (which functions to remove moisture out of the system).
I did run my previous system for a year before having to recharge it due to a leak in the evaporator coils. The system wasn't totally empty though but the coils did freeze over.
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